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Addgene inc spcas9 ng
Spcas9 Ng, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 27 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/spcas9+ng/SpCas9-NG+(Plasmid+%23138566)/bio_rxiv__64898__2025__12__20__695720-229-1-38
Average 93 stars, based on 27 article reviews
spcas9 ng - by Bioz Stars, 2026-10
93/100 stars

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Generated:

Article Title: Functional Characterization of DNA Repair Gene Variants in Live Cells Enabled Through Precision Genome Editing, Chemical Biology, and Biochemical Tools
Article Snippet: .. Base editor plasmids were generated by taking either AncBE4max-P2A-GFP (Addgene plasmid #112100) or ABE7.10max-P2A-GFP (Addgene plasmid #112101) and replacing the C-terminal 300 amino acids of Cas9n with that from SpCas9-NG (Addgene plasmid #117919) using USER (Uracil-Specific Excision Reagent) cloning136 to produce CBE and ABE variants that recognize a relaxed PAM of NG. .. The intact mCherry-P2A-EGFP reporter plasmids were generated with USER cloning following New England Biolabs (NEB) protocols, by replacing the ABE gene in the ABE-P2AEGFP plasmid (Addgene plasmid #112101) with the mCherry gene from the pBAD-mCherry plasmid (Addgene plasmid #54630).

Article Title: Precision genome editing and in-cell measurements of oxidative DNA damage repair enable functional and mechanistic characterization of cancer-associated MUTYH variants
Article Snippet: .. Base editor (BE) plasmids were generated by taking either AncBE4max-P2A-GFP (Addgene plasmid #112100) or ABE7.10max-P2A-GFP (Addgene plasmid #112101) and replacing the C-terminal 300 amino acids of Cas9n with that from SpCas9-NG (Addgene plasmid #117919) using USER (Uracil-Specific Excision Reagent) cloning [ ] to produce cytosine base editor (CBE) and adenine base editor (ABE) variants that recognize a relaxed PAM (protospacer adjacent motif) of NG (N = any DNA base; G = Guanine). .. The intact mCherry-P2A-EGFP reporter plasmids were generated with USER cloning following New England Biolabs (NEB) protocols, by replacing the ABE gene in the ABE-P2A-EGFP plasmid (Addgene plasmid #112101) with the mCherry gene from the pBAD-mCherry plasmid (Addgene plasmid #54630).

Article Title: Precision genome editing and in-cell measurements of oxidative DNA damage repair enable functional and mechanistic characterization of cancer-associated MUTYH variants.
Article Snippet: .. Base editor (BE) plasmids were generated by taking either AncBE4max-P2A-GFP (Addgene plasmid #112100) or ABE7.10max-P2A-GFP (Addgene plasmid #112101) and replacing the C-terminal 300 amino acids of Cas9n with that D ow nloaded from https://academ ic.oup.com /nar/article/53/6/gkaf037/8099200 by guest on 07 April 2025 from SpCas9-NG (Addgene plasmid #117919) using USER (Uracil-Specific Excision Reagent) cloning [ 58 ] to produce cytosine base editor (CBE) and adenine base editor (ABE) variants that recognize a relaxed PAM (protospacer adjacent motif) of NG (N = any DNA base; G = Guanine). .. The intact mCherry-P2A-EGFP reporter plasmids were generated with USER cloning following New England Biolabs (NEB) protocols, by replacing the ABE gene in the ABE-P2AEGFP plasmid (Addgene plasmid #112101) with the mCherry gene from the pBAD-mCherry plasmid (Addgene plasmid #54630).

Plasmid Preparation:

Article Title: Functional Characterization of DNA Repair Gene Variants in Live Cells Enabled Through Precision Genome Editing, Chemical Biology, and Biochemical Tools
Article Snippet: .. Base editor plasmids were generated by taking either AncBE4max-P2A-GFP (Addgene plasmid #112100) or ABE7.10max-P2A-GFP (Addgene plasmid #112101) and replacing the C-terminal 300 amino acids of Cas9n with that from SpCas9-NG (Addgene plasmid #117919) using USER (Uracil-Specific Excision Reagent) cloning136 to produce CBE and ABE variants that recognize a relaxed PAM of NG. .. The intact mCherry-P2A-EGFP reporter plasmids were generated with USER cloning following New England Biolabs (NEB) protocols, by replacing the ABE gene in the ABE-P2AEGFP plasmid (Addgene plasmid #112101) with the mCherry gene from the pBAD-mCherry plasmid (Addgene plasmid #54630).

Article Title: Precision genome editing and in-cell measurements of oxidative DNA damage repair enable functional and mechanistic characterization of cancer-associated MUTYH variants
Article Snippet: .. Base editor (BE) plasmids were generated by taking either AncBE4max-P2A-GFP (Addgene plasmid #112100) or ABE7.10max-P2A-GFP (Addgene plasmid #112101) and replacing the C-terminal 300 amino acids of Cas9n with that from SpCas9-NG (Addgene plasmid #117919) using USER (Uracil-Specific Excision Reagent) cloning [ ] to produce cytosine base editor (CBE) and adenine base editor (ABE) variants that recognize a relaxed PAM (protospacer adjacent motif) of NG (N = any DNA base; G = Guanine). .. The intact mCherry-P2A-EGFP reporter plasmids were generated with USER cloning following New England Biolabs (NEB) protocols, by replacing the ABE gene in the ABE-P2A-EGFP plasmid (Addgene plasmid #112101) with the mCherry gene from the pBAD-mCherry plasmid (Addgene plasmid #54630).

Article Title: Design of prime-editing guide RNAs with deep transfer learning
Article Snippet: The pCMV-PE2-P2A-hMLH1dn plasmid was purchased from Addgene (174827). .. The pCMV-NG-PE plasmid was constructed based on SpCas9-NG, which was purchased from Addgene (138566). ..

Article Title: One-step generation of tumor models by base editor multiplexing in adult stem cell-derived organoids.
Article Snippet: Human codon-optimized base editing constructs were a kind gift from David Liu; pCMV_ABEmax_P2A_GFP (plasmid #112101; Addgene), pCMV_AncBE4max_P2A_GFP (plasmid#112100; Addgene). pCMV_ SpCas9-NG_ABEmax_P2A_GFP, pCMV_SpCas9-NG_AncBE4max_P2A_ GFP and pCMV_SaKKH_AncBE4max_P2A_GFP were constructed by PCR amplification (Q5, NEB) amplifying everything except for SpCas9 using pCMV_ABEmax_P2A_GFP and pCMV_AncBE4max_P2A_GFP. .. Coding sequences for SpCas9-NG and SaKKHwere PCR amplified using the following plasmids NG-ABEmax (plasmid #124163; Addgene) and SaKKH-ABEmax (Plasmid #119815; Addgene) that were a kind gift from David Liu. .. Coding sequences and plasmid backbones were combined using the NEBbuilder HiFi DNA assembly mastermix (NEB) and subsequently transformed using OneShot Mach1t1 (Thermo Fisher Scientific) cells and plasmid identity was checked by Sanger sequencing (Macrogen).

Article Title: Manipulating the 3D organization of the largest synthetic yeast chromosome.
Article Snippet: Plugs were loaded onto pulsed field electrophoresis system using 1% agarose gels run in 0.5xTBE buffer (BioRad, CHEF Mapper XA) for chromosome separation. .. Swapping TAG stop codon to TAA by SpCas9-NG in yeast The SpCas9-NG coding sequence was amplified from the pX330-SpCas9-NG plasmid (Addgene, 117919). ..

Article Title: Precision genome editing and in-cell measurements of oxidative DNA damage repair enable functional and mechanistic characterization of cancer-associated MUTYH variants.
Article Snippet: .. Base editor (BE) plasmids were generated by taking either AncBE4max-P2A-GFP (Addgene plasmid #112100) or ABE7.10max-P2A-GFP (Addgene plasmid #112101) and replacing the C-terminal 300 amino acids of Cas9n with that D ow nloaded from https://academ ic.oup.com /nar/article/53/6/gkaf037/8099200 by guest on 07 April 2025 from SpCas9-NG (Addgene plasmid #117919) using USER (Uracil-Specific Excision Reagent) cloning [ 58 ] to produce cytosine base editor (CBE) and adenine base editor (ABE) variants that recognize a relaxed PAM (protospacer adjacent motif) of NG (N = any DNA base; G = Guanine). .. The intact mCherry-P2A-EGFP reporter plasmids were generated with USER cloning following New England Biolabs (NEB) protocols, by replacing the ABE gene in the ABE-P2AEGFP plasmid (Addgene plasmid #112101) with the mCherry gene from the pBAD-mCherry plasmid (Addgene plasmid #54630).

Cloning:

Article Title: Precision genome editing and in-cell measurements of oxidative DNA damage repair enable functional and mechanistic characterization of cancer-associated MUTYH variants
Article Snippet: .. Base editor (BE) plasmids were generated by taking either AncBE4max-P2A-GFP (Addgene plasmid #112100) or ABE7.10max-P2A-GFP (Addgene plasmid #112101) and replacing the C-terminal 300 amino acids of Cas9n with that from SpCas9-NG (Addgene plasmid #117919) using USER (Uracil-Specific Excision Reagent) cloning [ ] to produce cytosine base editor (CBE) and adenine base editor (ABE) variants that recognize a relaxed PAM (protospacer adjacent motif) of NG (N = any DNA base; G = Guanine). .. The intact mCherry-P2A-EGFP reporter plasmids were generated with USER cloning following New England Biolabs (NEB) protocols, by replacing the ABE gene in the ABE-P2A-EGFP plasmid (Addgene plasmid #112101) with the mCherry gene from the pBAD-mCherry plasmid (Addgene plasmid #54630).

Article Title: A cleavage rule for selection of increased-fidelity SpCas9 variants with high efficiency and no detectable off-targets
Article Snippet: .. Cloning of xCas9, SpCas9-NG and HypaR- SpCas9 variants xCas9-L324R, xCas9-I409S, xCas9-I694M, xCas9-triple mutant, HypaR-SpCas9-L847R-V1015R, xCas9-L847R-V1015R and SpCas9-NG-L847R-V1015R variants were constructed from the parent SpCas9 variants (Addgene numbers: #, #) by digestion with BglII and EcoRI restriction enzymes and assembled with PCR fragments using the NEBuilder HiFi DNA Assembly Master Mix. ..

Article Title: Precision genome editing and in-cell measurements of oxidative DNA damage repair enable functional and mechanistic characterization of cancer-associated MUTYH variants.
Article Snippet: .. Base editor (BE) plasmids were generated by taking either AncBE4max-P2A-GFP (Addgene plasmid #112100) or ABE7.10max-P2A-GFP (Addgene plasmid #112101) and replacing the C-terminal 300 amino acids of Cas9n with that D ow nloaded from https://academ ic.oup.com /nar/article/53/6/gkaf037/8099200 by guest on 07 April 2025 from SpCas9-NG (Addgene plasmid #117919) using USER (Uracil-Specific Excision Reagent) cloning [ 58 ] to produce cytosine base editor (CBE) and adenine base editor (ABE) variants that recognize a relaxed PAM (protospacer adjacent motif) of NG (N = any DNA base; G = Guanine). .. The intact mCherry-P2A-EGFP reporter plasmids were generated with USER cloning following New England Biolabs (NEB) protocols, by replacing the ABE gene in the ABE-P2AEGFP plasmid (Addgene plasmid #112101) with the mCherry gene from the pBAD-mCherry plasmid (Addgene plasmid #54630).

Construct:

Article Title: Design of prime-editing guide RNAs with deep transfer learning
Article Snippet: The pCMV-PE2-P2A-hMLH1dn plasmid was purchased from Addgene (174827). .. The pCMV-NG-PE plasmid was constructed based on SpCas9-NG, which was purchased from Addgene (138566). ..

Article Title: A cleavage rule for selection of increased-fidelity SpCas9 variants with high efficiency and no detectable off-targets
Article Snippet: .. Cloning of xCas9, SpCas9-NG and HypaR- SpCas9 variants xCas9-L324R, xCas9-I409S, xCas9-I694M, xCas9-triple mutant, HypaR-SpCas9-L847R-V1015R, xCas9-L847R-V1015R and SpCas9-NG-L847R-V1015R variants were constructed from the parent SpCas9 variants (Addgene numbers: #, #) by digestion with BglII and EcoRI restriction enzymes and assembled with PCR fragments using the NEBuilder HiFi DNA Assembly Master Mix. ..

Polymerase Chain Reaction:

Article Title: One-step generation of tumor models by base editor multiplexing in adult stem cell-derived organoids.
Article Snippet: Human codon-optimized base editing constructs were a kind gift from David Liu; pCMV_ABEmax_P2A_GFP (plasmid #112101; Addgene), pCMV_AncBE4max_P2A_GFP (plasmid#112100; Addgene). pCMV_ SpCas9-NG_ABEmax_P2A_GFP, pCMV_SpCas9-NG_AncBE4max_P2A_ GFP and pCMV_SaKKH_AncBE4max_P2A_GFP were constructed by PCR amplification (Q5, NEB) amplifying everything except for SpCas9 using pCMV_ABEmax_P2A_GFP and pCMV_AncBE4max_P2A_GFP. .. Coding sequences for SpCas9-NG and SaKKHwere PCR amplified using the following plasmids NG-ABEmax (plasmid #124163; Addgene) and SaKKH-ABEmax (Plasmid #119815; Addgene) that were a kind gift from David Liu. .. Coding sequences and plasmid backbones were combined using the NEBbuilder HiFi DNA assembly mastermix (NEB) and subsequently transformed using OneShot Mach1t1 (Thermo Fisher Scientific) cells and plasmid identity was checked by Sanger sequencing (Macrogen).

Article Title: A cleavage rule for selection of increased-fidelity SpCas9 variants with high efficiency and no detectable off-targets
Article Snippet: .. Cloning of xCas9, SpCas9-NG and HypaR- SpCas9 variants xCas9-L324R, xCas9-I409S, xCas9-I694M, xCas9-triple mutant, HypaR-SpCas9-L847R-V1015R, xCas9-L847R-V1015R and SpCas9-NG-L847R-V1015R variants were constructed from the parent SpCas9 variants (Addgene numbers: #, #) by digestion with BglII and EcoRI restriction enzymes and assembled with PCR fragments using the NEBuilder HiFi DNA Assembly Master Mix. ..

Amplification:

Article Title: One-step generation of tumor models by base editor multiplexing in adult stem cell-derived organoids.
Article Snippet: Human codon-optimized base editing constructs were a kind gift from David Liu; pCMV_ABEmax_P2A_GFP (plasmid #112101; Addgene), pCMV_AncBE4max_P2A_GFP (plasmid#112100; Addgene). pCMV_ SpCas9-NG_ABEmax_P2A_GFP, pCMV_SpCas9-NG_AncBE4max_P2A_ GFP and pCMV_SaKKH_AncBE4max_P2A_GFP were constructed by PCR amplification (Q5, NEB) amplifying everything except for SpCas9 using pCMV_ABEmax_P2A_GFP and pCMV_AncBE4max_P2A_GFP. .. Coding sequences for SpCas9-NG and SaKKHwere PCR amplified using the following plasmids NG-ABEmax (plasmid #124163; Addgene) and SaKKH-ABEmax (Plasmid #119815; Addgene) that were a kind gift from David Liu. .. Coding sequences and plasmid backbones were combined using the NEBbuilder HiFi DNA assembly mastermix (NEB) and subsequently transformed using OneShot Mach1t1 (Thermo Fisher Scientific) cells and plasmid identity was checked by Sanger sequencing (Macrogen).

Article Title: Manipulating the 3D organization of the largest synthetic yeast chromosome.
Article Snippet: Plugs were loaded onto pulsed field electrophoresis system using 1% agarose gels run in 0.5xTBE buffer (BioRad, CHEF Mapper XA) for chromosome separation. .. Swapping TAG stop codon to TAA by SpCas9-NG in yeast The SpCas9-NG coding sequence was amplified from the pX330-SpCas9-NG plasmid (Addgene, 117919). ..

Sequencing:

Article Title: Manipulating the 3D organization of the largest synthetic yeast chromosome.
Article Snippet: Plugs were loaded onto pulsed field electrophoresis system using 1% agarose gels run in 0.5xTBE buffer (BioRad, CHEF Mapper XA) for chromosome separation. .. Swapping TAG stop codon to TAA by SpCas9-NG in yeast The SpCas9-NG coding sequence was amplified from the pX330-SpCas9-NG plasmid (Addgene, 117919). ..

Mutagenesis:

Article Title: A cleavage rule for selection of increased-fidelity SpCas9 variants with high efficiency and no detectable off-targets
Article Snippet: .. Cloning of xCas9, SpCas9-NG and HypaR- SpCas9 variants xCas9-L324R, xCas9-I409S, xCas9-I694M, xCas9-triple mutant, HypaR-SpCas9-L847R-V1015R, xCas9-L847R-V1015R and SpCas9-NG-L847R-V1015R variants were constructed from the parent SpCas9 variants (Addgene numbers: #, #) by digestion with BglII and EcoRI restriction enzymes and assembled with PCR fragments using the NEBuilder HiFi DNA Assembly Master Mix. ..



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